: | <http://purl.org/stringdb#> |
2020-04-23 | <http://purl.obolibrary.org/obo/obi/2020-04-23> |
lscr | <http://purl.org/lscr#> |
owl | <http://www.w3.org/2002/07/owl#> |
wiki | <https://en.wikipedia.org/wiki> |
xsd | <http://www.w3.org/2001/XMLSchema#> |
skos | <http://www.w3.org/2004/02/skos/core#> |
rdfs | <http://www.w3.org/2000/01/rdf-schema#> |
taxonomy | <http://purl.uniprot.org/taxonomy> |
manual | <http://www.uniprot.org/manual> |
database | <http://purl.uniprot.org/database> |
ensembl | <http://rdf.ebi.ac.uk/terms/ensembl> |
pubmed | <http://www.ncbi.nlm.nih.gov/pubmed> |
docs | <https://www.uniprot.org/docs> |
dct | <http://purl.org/dc/terms/> |
purl-org | <http://purl.org> |
foaf | <http://xmlns.com/foaf/0.1/> |
orth | <http://purl.org/net/orth#> |
oboInOwl | <http://www.geneontology.org/formats/oboInOwl> |
sio | <http://semanticscience.org/resource/> |
query | <http://purl.org/query#> |
www-ebi-ac-uk | <https://www.ebi.ac.uk> |
efo | <http://www.ebi.ac.uk/efo> |
up | <http://purl.uniprot.org/core/> |
help | <https://www.uniprot.org/help> |
rdf | <http://www.w3.org/1999/02/22-rdf-syntax-ns#> |
obo | <http://purl.obolibrary.org/obo/> |
dc | <http://purl.org/dc/elements/1.1/> |
snap | <http://www.ifomis.org/bfo/1.1/snap> |
IRI: http://purl.org/net/orth#HomologsCluster
IRI: http://purl.uniprot.org/core/Concept
IRI: http://www.w3.org/2004/02/skos/core#ConceptScheme
Thesauri, classification schemes, subject heading lists, taxonomies, 'folksonomies', and other types of controlled vocabulary are all examples of concept schemes. Concept schemes are also embedded in glossaries and terminologies.
IRI: http://semanticscience.org/resource/SIO_000750
IRI: http://purl.uniprot.org/core/Database
IRI: http://purl.obolibrary.org/obo/SO_0000704
IRI: http://purl.org/net/orth#Gene
IRI: http://purl.org/net/orth#HomologyRelation
IRI: http://purl.obolibrary.org/obo/BFO_0000040
A heart, a human, a fly, a microarray.
IRI: http://purl.org/stringdb#NetworkImage
IRI: http://purl.obolibrary.org/obo/NCIT_C14250
IRI: http://purl.org/net/orth#Organism
IRI: http://purl.obolibrary.org/obo/SO_0000104
IRI: http://purl.org/net/orth#Protein
IRI: http://purl.uniprot.org/core/Protein
IRI: http://rdf.ebi.ac.uk/terms/ensembl/protein
IRI: http://purl.org/stringdb#ProteinProteinInteraction
IRI: http://purl.org/stringdb#PPIEnrichment
IRI: http://purl.uniprot.org/core/Resource
IRI: http://purl.org/stringdb#Score
IRI: http://purl.org/net/orth#SequenceUnit
IRI: http://purl.uniprot.org/core/classifiedWith
IRI: http://purl.obolibrary.org/obo/RO_0001018
IRI: http://purl.uniprot.org/core/database
has characteristics: functional
IRI: http://purl.org/stringdb#functionallyInteractsWith
has characteristics: symmetric, irreflexive
IRI: http://purl.obolibrary.org/obo/CDAO_0000178
IRI: http://purl.org/stringdb#hasFunctionalInteractionScore
has characteristics: functional
IRI: http://purl.org/net/orth#hasHomolog
has characteristics: symmetric
IRI: http://purl.org/net/orth#hasHomologousMember
IRI: http://purl.org/net/orth#hasHomologyData
IRI: http://purl.org/stringdb#hasNetworkImage
IRI: http://semanticscience.org/resource/SIO_000028
has characteristics: transitive, reflexive
IRI: http://purl.org/stringdb#hasPhysicalInteractionScore
has characteristics: functional
IRI: http://purl.org/stringdb#hasProtein
IRI: http://purl.org/net/orth#inDataset
IRI: http://purl.obolibrary.org/obo/RO_0002162
IRI: http://purl.obolibrary.org/obo/RO_0002434
has characteristics: symmetric
IRI: http://purl.org/net/orth#isHomologousMember
IRI: http://www.w3.org/2004/02/skos/core#inScheme
IRI: http://purl.obolibrary.org/obo/RO_0002350
IRI: http://purl.org/net/orth#organism
IRI: http://purl.obolibrary.org/obo/CDAO_0000194
IRI: http://purl.org/stringdb#physicallyInteractsWith
has characteristics: symmetric, irreflexive
IRI: http://purl.uniprot.org/core/rank
has characteristics: functional
IRI: http://purl.uniprot.org/core/replaces
IRI: http://purl.org/stringdb#averageNodeDegree
has characteristics: functional
IRI: http://purl.org/stringdb#bitscore
has characteristics: functional
IRI: http://purl.org/stringdb#coexpressionScore
has characteristics: functional
IRI: http://purl.org/stringdb#combinedScore
has characteristics: functional
IRI: http://purl.org/stringdb#databaseScore
has characteristics: functional
IRI: http://purl.org/dc/elements/1.1/description
IRI: http://purl.org/stringdb#edgeNumber
has characteristics: functional
IRI: http://purl.org/stringdb#localClusteringCoefficient
has characteristics: functional
IRI: http://purl.org/stringdb#expectedEdgeNumber
has characteristics: functional
IRI: http://purl.org/stringdb#experimentalScore
has characteristics: functional
IRI: http://purl.org/stringdb#format
IRI: http://purl.org/stringdb#fusionScore
has characteristics: functional
IRI: http://purl.org/stringdb#neighborhoodScore
has characteristics: functional
IRI: http://purl.uniprot.org/core/mnemonic
IRI: http://purl.org/stringdb#networkFlavor
IRI: http://purl.org/stringdb#networkType
IRI: http://purl.org/stringdb#pvalue
has characteristics: functional
IRI: http://purl.org/stringdb#partialScore
IRI: http://purl.org/stringdb#phylogeneticScore
has characteristics: functional
IRI: http://purl.org/stringdb#nodeNumber
has characteristics: functional
IRI: http://purl.org/stringdb#resolution
IRI: http://purl.uniprot.org/core/scientificName
has characteristics: functional
IRI: http://purl.org/stringdb#textMiningScore
has characteristics: functional
IRI: http://www.w3.org/2000/01/rdf-schema#altLabel
IRI: http://www.w3.org/2004/02/skos/core#altLabel
Acronyms, abbreviations, spelling variants, and irregular plural/singular forms may be included among the alternative labels for a concept. Mis-spelled terms are normally included as hidden labels (see skos:hiddenLabel).
IRI: http://www.w3.org/2004/02/skos/core#closeMatch
IRI: http://purl.org/dc/elements/1.1/creator
IRI: http://purl.obolibrary.org/obo/IAO_0000232
IRI: http://purl.org/dc/terms/issued
IRI: http://purl.obolibrary.org/obo/IAO_0000115
IRI: http://www.w3.org/2004/02/skos/core#definition
IRI: http://purl.org/dc/terms/description
IRI: http://purl.obolibrary.org/obo/IAO_0000116
IRI: http://www.w3.org/2004/02/skos/core#example
IRI: http://purl.obolibrary.org/obo/IAO_0000112
IRI: http://www.geneontology.org/formats/oboInOwl#hasAlternativeId
IRI: http://www.geneontology.org/formats/oboInOwl#hasDbXref
IRI: http://www.geneontology.org/formats/oboInOwl#hasExactSynonym
IRI: http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym
IRI: http://www.geneontology.org/formats/oboInOwl#hasSynonym
IRI: http://purl.obolibrary.org/obo/IAO_0000111
IRI: http://purl.obolibrary.org/obo/IAO_0000119
IRI: http://purl.org/dc/terms/license
IRI: http://www.w3.org/2002/07/owl#maxQualifiedCardinality
IRI: http://www.w3.org/2004/02/skos/core#note
IRI: http://xmlns.com/foaf/0.1/page
IRI: http://www.w3.org/2004/02/skos/core#prefLabel
IRI: http://www.w3.org/2004/02/skos/core#scopeNote
IRI: http://purl.org/lscr#xrefEMBLSequence
IRI: http://purl.org/lscr#xrefEnsembl
IRI: http://purl.org/lscr#xrefEnsemblGene
IRI: http://purl.org/lscr#xrefEnsemblProtein
IRI: http://purl.org/lscr#xrefEnsemblTranscript
IRI: http://purl.org/lscr#xrefMBGD
IRI: http://purl.org/lscr#xrefMBGDGene
IRI: http://purl.org/lscr#xrefMBGDGroup
IRI: http://purl.org/lscr#xrefNCBI
IRI: http://purl.org/lscr#xrefNCBIGene
IRI: http://purl.org/lscr#xrefNCBIProtein
IRI: http://purl.org/lscr#xrefNCBIRefSeq
IRI: http://purl.org/lscr#xrefOMA
IRI: http://purl.org/lscr#xrefOMAGroup
IRI: http://purl.org/lscr#xrefOMAProtein
IRI: http://purl.org/lscr#xrefUniprot
IRI: http://www.ebi.ac.uk/efo/source_definition
IRI: http://purl.obolibrary.org/obo/IAO_0000117
IRI: http://purl.obolibrary.org/obo/go.owl
IRI: http://purl.uniprot.org/taxonomy/9606
IRI: http://purl.uniprot.org/database/InterPro
IRI: http://purl.uniprot.org/database/KEGG
IRI: http://purl.obolibrary.org/obo/OBI_0000175
IRI: http://purl.uniprot.org/database/Pfam
IRI: https://pubmed.ncbi.nlm.nih.gov
IRI: http://purl.uniprot.org/database/Reactome
IRI: http://purl.uniprot.org/database/SMART
IRI: https://string-db.org
IRI: https://www.uniprot.org/docs/keywlist.txt
The authors would like to thank Silvio Peroni for developing LODE, a Live OWL Documentation Environment, which is used for representing the Cross Referencing Section of this document and Daniel Garijo for developing Widoco, the program used to create the template used in this documentation.